Generation and Maintenance - An exposition of how LD arises and is maintained/degradated.
Measures of LD - A summary of the different measures of Linkage Disequilibrium
Using LD in gene mapping - How LD affects our search for disease determinants.
Calculating LD - How to calculate LD for a pair of loci, and methods to calculate pair-wise LD measures for a large number of markers using Stata
Haplotype analysis - How to infer haplotypes and test for associations between haplotypes in case-control studies.
Tagging SNPs - How to determine haplotype tagging SNPs and use them in case-control studies.
Devlin B., Risch N. (1995) A Comparision of Linkage Disequilibrium Measures for Fine-Scale Mapping. Genomics 29:311-322
Lewontin, R.C. (1964) The interaction of selection and linkage. I. General considerations: heterotic models. Genetics COMPLETE URL 49:49-67